Pre-generated flat files
There are some pre-generated flat files used by this web server that you can download to use with the standalone version for bigger input files.
SVM Models
- eQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3-P300
- dsQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3-P300
- dsQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me2-H3K4me3
- eQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me2-H3K4me3
- eQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3
- dsQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3
- eQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me3
- dsQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me3
Note
When you use the standalone version of CAPE to generate the model, please also include P300, H2A.Z, H3K9ac and the essential known TF ChIP-seq peaks if they are available in the corresponding tissue.