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Cellular dependent deactivating mutations predictor
CellulAr dePendent dEactivating mutations predictor






Pre-generated flat files

There are some pre-generated flat files used by this web server that you can download to use with the standalone version for bigger input files.

SVM Models

  1. eQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3-P300
  2. dsQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3-P300
  3. dsQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me2-H3K4me3
  4. eQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me2-H3K4me3
  5. eQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3
  6. dsQTL-DNase.macs2-H2A.Z-H3K27ac-H3K4me1-H3K4me2-H3K4me3
  7. eQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me3
  8. dsQTL-DNase.macs2-H3K27ac-H3K4me1-H3K4me3

Note

When you use the standalone version of CAPE to generate the model, please also include P300, H2A.Z, H3K9ac and the essential known TF ChIP-seq peaks if they are available in the corresponding tissue.